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brainsets documentation
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brainsets documentation

Get Started

  • Installation

Tutorials

  • Using the brainsets CLI
  • Preparing a new Dataset
  • Creating a BrainsetPipeline
  • Working with the Neuroprobe Benchmark

CLI Reference

  • Commands

Package Reference

  • brainsets.pipeline
    • BrainsetPipeline
  • brainsets.descriptions
    • BrainsetDescription
    • SubjectDescription
    • SessionDescription
    • DeviceDescription
  • brainsets.taxonomy
    • Species
    • Sex
    • Task
    • Orientation_8_Classes
    • Macaque
    • Cre_line
    • RecordingTech
    • Hemisphere
  • brainsets.utils
    • extract_subject_from_nwb
    • extract_spikes_from_nwbfile
    • download_file
    • get_nwb_asset_list
    • generate_stratified_folds
    • generate_string_kfold_assignment
    • calculate_sampling_rate
  • brainsets.core
    • NestedEnumType
    • StringIntEnum
    • Dictable
    • string_int_enum_serialize_fn
    • datetime_serialize_fn
    • serialize_fn_map
  • brainsets.processing
    • downsample_wideband
    • extract_bands
    • cube_to_long

Datasets

  • brainsets.datasets
    • PerichMillerPopulation2018
    • PeiPandarinathNLB2021
    • FlintSlutzkyAccurate2012
    • ChurchlandShenoyNeural2012
    • OdohertySabesNonhuman2017
    • VollanMoserAlternating2025
    • AllenVisualCodingOphys2016
    • Neuroprobe2025
    • KempSleepEDF2013
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brainsets.taxonomyΒΆ

Species

Sex

Follows the DANDI definition of sex.

Task

Orientation_8_Classes

Macaque

Cre_line

RecordingTech

Hemisphere

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Species
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DeviceDescription
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